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Theobroma cacao: 10 kbp from Tc01:1..10,000
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Data Source
GNPAnnot Musa
Theobroma cacao
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1. Gene Models
1. Gene Models
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CDS
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Non coding tRNAs
Transposable element gene models
Locus
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Polypeptide
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Non coding rRNAs
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Protein coding gene models
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2. Repetitive elements
2. Repetitive elements
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LTR retrotransposons
MITE
Transposons
3. Similarity with cDNA
3. Similarity with cDNA
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GenomeThreader Cocoa
[?]
4. Genomic sequence
4. Genomic sequence
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3-frame translation (forward)
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DNA/GC Content
3-frame translation (reverse)
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Scaffold
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5. Similarity with protein sequences
5. Similarity with protein sequences
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BlastX Swiss-Prot
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BlastX TrEMBL
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6. Marker
6. Marker
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Consensus cotton
7. Transcriptome
7. Transcriptome
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Assembly Cotton 46
General
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Genetic Marker
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Genetic Marker
Scaffolds
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